Flexible payments for
modern Shopify stores

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How Atoa works in
your Shopify checkout

See how Atoa’s Shopify payment gateway integration fits into your existing checkout, giving customers a faster Pay by Bank option while keeping cards available.

Choose Pay by Bank

Customer selects their bank and is redirected to their banking app.

Approve in their Bank App

The payment is approved in seconds using Face ID or fingerprint.

You get paid quicker

Payout to your business account within 48 hours.

Customer choosing Pay by Bank at Shopify checkoutCustomer approving Shopify payment in their banking appAtoa instant payment notification showing faster Shopify payouts

Choose Pay by Bank

Customer selects their bank and is redirected to their banking app.

Customer choosing Pay by Bank at Shopify checkout

Approve in their Bank App

The payment is approved in seconds using Face ID or fingerprint.

Customer approving Shopify payment in their banking app

You get paid quicker

Payout to your business account within 48 hours.

Atoa instant payment notification showing faster Shopify payouts

Faster, simpler payments for Shopify businesses

A modern way to move money that helps improve conversions, protect margins, and scale operations with confidence.

Lower payment fees

Lower payment fees

Pay by Bank offers a more
affordable way to accept
payments, without changing
your existing setup.

Faster settlements

Faster settlements

Pay by Bank settles directly to
your bank account, helping
improve cash flow and simplify
finance operations.

Integrate with Shopify

Integrate with Shopify

Transactions sync automatically in
Shopify, with refunds managed in-
dashboard.

Built for UK compliance

Built for UK compliance

Pay by Bank is fully FCA- authorised and built to meet UK regulatory standards.

Try Atoa

Quick setup, no friction

Install Atoa directly from the Shopify App Store with a simple setup. Keep your existing payment methods and add Pay by Bank as a faster, lower-cost option at checkout.
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Try Atoa

See how much you could save with Atoa

Book a short demo to see how Atoa helps businesses reduce fees, improve cash flow, and streamline payment operations.
  • Up to 50% lower payment fees
  • Faster access to funds
  • One platform for modern payments
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ISO-27001 and SOC2 Secure

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Security backed by UK banks

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Authorised by the FCA

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Atoa’s Shopify payment gateway integration adds Pay by Bank as a payment option in your Shopify checkout alongside your existing card payments. Customers can choose to pay via their Bank app for a faster, lower-cost experience, or pay by card as usual. Transactions sync automatically to your Shopify admin and refunds are managed directly from the Atoa dashboard.

Yes. Atoa offers both Pay by Bank and card payments on Shopify. When you install the Atoa plugins from the Shopify App Store, both payment methods become available at checkout. Pay by Bank gives your customers a fast, bank-approved experience with lower transaction fees. Card payments continue to work as normal, no change to the customer experience for those who prefer it.

Yes. Atoa is a fully regulated Shopify payment gateway, authorised by the Financial Conduct Authority (FCA, FRN #1007647). Every Pay by Bank transaction is secured by UK Open Banking standards and biometric authentication. Atoa is available on the Shopify App Store and is approved for use by UK registered limited businesses.

Pay by Bank payments don’t have chargebacks. They’re bank-to-bank and final once your customer approves them, so there’s no risk of disputes or the admin that comes with them. This protects your Shopify store from fraudulent disputes and the admin that comes with them.

Card payments still follow standard card dispute rules, so chargebacks may apply.

Atoa has two separate plugins available on the Shopify App Store, one for Pay by Bank and one for card payments. Install whichever you need, or both:

For a full walkthrough, visit our Help Centre.

Fees depend on how your customer pays. Pay by Bank payments typically cost up to 50% less than standard card fees, making them a more cost-effective option, especially for higher-value transactions.